Missing gene names in dataset

HIPC scRNA-seq Annotation Benchmark Challenge
1

One of the datasets we have been assigned does not have gene names assiged in the h5ad object. Looking at the adata.var_names slot just gives:

Index(['0', '3', '4', '6', '7', '8', '13', '14', '15', '16',
...
'37285', '37286', '37287', '37288', '37290', '37291', '37292', '37293',
'37294', '37295'],
dtype='object', length=29085)

There are no gene symbols or IDs in the

adata.var

dataframe either

I’m not naming the dataset here for confidentiality, but happy to provide this.

2

Thanks for flagging this, and apologies for the inconvenience. This has now been resolved. All datasets have gene names properly assigned in adata.var_names, and the .var dataframe has been updated accordingly.